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[PMC free article: PMC2726827] [PubMed: 19632176] 31

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Motif derivation and assessment of experiment success We evaluated the success of GHT- and HT-SELEX experiments systematically alongside other Codebook datasets generated with ChIP–seq, protein binding microarray and SMiLE-seq experiments (see Supplementary Table 6 for a summary of all experiments), by performing motif discovery with nine different programs and then testing their performance in all experiments for the same TF